Lee D, Kim J, Beste MT, Koretzky GA, Hammer DA.

Integr Biol (Camb). 2012 May 1. [Epub ahead of print]

Wee LJ, Lim SJ, Ng LF, Tong JC.

Front Biosci (Elite Ed). 2012 Jan 1;4:311-9. Review.

Yates AJ, Van Baalen M, Antia R.

PLoS Comput Biol. 2011 Nov;7(11):e1002274. Epub 2011 Nov 17.

Kippner LE, Finn NA, Shukla S, Kemp ML.

BMC Syst Biol. 2011 Oct 13;5:164.

Wu H, Kumar A, Miao H, Holden-Wiltse J, Mosmann TR, Livingstone AM, Belz GT, Perelson AS, Zand MS, Topham DJ.

J Immunol. 2011 Nov 1;187(9):4474-82. Epub 2011 Sep 23.

Garg A, Mohanram K, De Micheli G, Xenarios I.

Methods Mol Biol. 2012;786:397-443.

Andrianov AM, Anishchenko IV, Tuzikov AV.

J Chem Inf Model. 2011 Oct 24;51(10):2760-7. Epub 2011 Sep 22.

Mirsky HP, Miller MJ, Linderman JJ, Kirschner DE.

J Theor Biol. 2011 Oct 21;287:160-70. Epub 2011 Jul 23. Review.

Vélez de Mendizábal N, Carneiro J, Solé RV, Goñi J, Bragard J, Martinez-Forero I, Martinez-Pasamar S, Sepulcre J, Torrealdea J, Bagnato F, Garcia-Ojalvo J, Villoslada P.

BMC Syst Biol. 2011 Jul 15;5:114.

Aguda BD, Marsh CB, Thacker M, Crouser ED.

PLoS One. 2011;6(5):e19544. Epub 2011 May 27.

Rupp B, Günther S, Makhmoor T, Schlundt A, Dickhaut K, Gupta S, Choudhary I, Wiesmüller KH, Jung G, Freund C, Falk K, Rötzschke O, Kühne R.

PLoS One. 2011 Apr 14;6(4):e18662.

Yanover C, Bradley P.

Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6981-6. Epub 2011 Apr 8.

Pedicini M, Barrenäs F, Clancy T, Castiglione F, Hovig E, Kanduri K, Santoni D, Benson M.

PLoS Comput Biol. 2010 Dec 16;6(12):e1001032.

Feinerman O, Jentsch G, Tkach KE, Coward JW, Hathorn MM, Sneddon MW, Emonet T, Smith KA, Altan-Bonnet G.

Mol Syst Biol. 2010 Nov 30;6:437.

Khadra A, Tsai S, Santamaria P, Edelstein-Keshet L.

J Immunol. 2010 Nov 15;185(10):5962-72. Epub 2010 Oct 20.

Skommer J, Brittain T, Raychaudhuri S.

Apoptosis. 2010 Oct;15(10):1223-33.

Coward J, Germain RN, Altan-Bonnet G.

Cold Spring Harb Perspect Biol. 2010 Jun;2(6):a005538. Epub 2010 May 5. Review.

Khadra A, Santamaria P, Edelstein-Keshet L.

Int Immunol. 2010 Jul;22(7):571-82. Epub 2010 May 24.

Stavrakoudis A.

Curr Comput Aided Drug Des. 2010 Sep;6(3):207-22. Review.

Miao H, Hollenbaugh JA, Zand MS, Holden-Wiltse J, Mosmann TR, Perelson AS, Wu H, Topham DJ.

J Virol. 2010 Jul;84(13):6687-98. Epub 2010 Apr 21.

Love TM, Thurston SW, Keefer MC, Dewhurst S, Lee HY.

J Virol. 2010 Jun;84(11):5802-14. Epub 2010 Mar 24.

Kim PS, Levy D, Lee PP.

Methods Enzymol. 2009;467:79-109.

Nelson P, Smith N, Ciupe S, Zou W, Omenn GS, Pietropaolo M.

Math Biosci Eng. 2009 Oct;6(4):753-78. doi: 10.3934/mbe.2009.6.753.

Mishra S, Sinha S.

J Biomol Struct Dyn. 2009 Dec;27(3):293-306. Review.

Sieker F, May A, Zacharias M.

Curr Protein Pept Sci. 2009 Jun;10(3):286-96. Review.

Hirsch AM, Rivet CA, Zhang B, Kemp ML, Lu H.

Lab Chip. 2009 Feb 21;9(4):536-44. Epub 2008 Nov 20.

Chavali AK, Gianchandani EP, Tung KS, Lawrence MB, Peirce SM, Papin JA.

Trends Immunol. 2008 Dec;29(12):589-99. Epub 2008 Oct 27. Review.

Feinerman O, Veiga J, Dorfman JR, Germain RN, Altan-Bonnet G.

Science. 2008 Aug 22;321(5892):1081-4.

Chaitra MG, Shaila MS, Nayak R.

Microbes Infect. 2008 Jul;10(8):858-67. Epub 2008 May 2.

Miao H, Dykes C, Demeter LM, Cavenaugh J, Park SY, Perelson AS, Wu H.

Bull Math Biol. 2008 Aug;70(6):1749-71. Epub 2008 Jul 22.

Kangueane P, Sakharkar MK.

Methods Mol Biol. 2007;409:175-81.

Buza JJ, Burgess SC.

J Proteome Res. 2008 Jun;7(6):2380-7. Epub 2008 Apr 16.

Arkhipov SN, Maly IV.

Phys Biol. 2008 Apr 1;5(1):016006.

Meuth SG, Bittner S, Meuth P, Simon OJ, Budde T, Wiendl H.

J Biol Chem. 2008 May 23;283(21):14559-70. Epub 2008 Mar 28.

Mason WS, Litwin S, Jilbert AR.

Hepatol Int. 2008 Mar;2(1):3-16. Epub 2007 Dec 14.

Shack LA, Buza JJ, Burgess SC.

Cancer Immunol Immunother. 2008 Aug;57(8):1253-62. Epub 2008 Feb 7.

Listgarten J, Frahm N, Kadie C, Brander C, Heckerman D.

PLoS Comput Biol. 2007 Oct;3(10):1879-86.

Saez-Rodriguez J, Simeoni L, Lindquist JA, Hemenway R, Bommhardt U, Arndt B, Haus UU, Weismantel R, Gilles ED, Klamt S, Schraven B.

PLoS Comput Biol. 2007 Aug;3(8):e163. Epub 2007 Jul 5.

Arkhipov SN, Maly IV.

PLoS One. 2007 Jul 25;2(7):e633.

Wang GP, Ciuffi A, Leipzig J, Berry CC, Bushman FD.

Genome Res. 2007 Aug;17(8):1186-94. Epub 2007 Jun 1.

Morikis D, Rizos AK, Spandidos DA, Krambovitis E.

Int J Mol Med. 2007 Mar;19(3):343-51.

Wu H, Huang Y, Acosta EP, Park JG, Yu S, Rosenkranz SL, Kuritzkes DR, Eron JJ, Perelson AS, Gerber JG.

J Pharmacokinet Pharmacodyn. 2006 Aug;33(4):399-419. Epub 2006 Apr 1.

Tong JC, Zhang GL, Tan TW, August JT, Brusic V, Ranganathan S.

Bioinformatics. 2006 May 15;22(10):1232-8. Epub 2006 Mar 1.

Vani J, Shaila MS, Chandra NR, Nayak R.

Microbes Infect. 2006 Mar;8(3):738-46. Epub 2006 Jan 18.

Hamza A, Zhan CG.

J Phys Chem B. 2006 Feb 16;110(6):2910-7.

Shen T, Zong C, Hamelberg D, McCammon JA, Wolynes PG.

FASEB J. 2005 Sep;19(11):1389-95.

Weinberger LS, Burnett JC, Toettcher JE, Arkin AP, Schaffer DV.

Cell. 2005 Jul 29;122(2):169-82.

Casal A, Sumen C, Reddy TE, Alber MS, Lee PP.

J Theor Biol. 2005 Oct 21;236(4):376-91.

Chen D, Daniel KG, Chen MS, Kuhn DJ, Landis-Piwowar KR, Dou QP.

Biochem Pharmacol. 2005 May 15;69(10):1421-32.

Callard RE, Yates AJ.

Immunology. 2005 May;115(1):21-33. Review.

Bonnefoix T, Bonnefoix P, Perron P, Mi JQ, Ng WF, Lechler R, Bensa JC, Cahn JY, Leroux D.

J Immunol. 2005 Mar 15;174(6):3421-31.

Bocharov G, Ford NJ, Ludewig B.

Methods Mol Med. 2005;109:19-34.

Koehler NK, Yang CY, Varady J, Lu Y, Wu XW, Liu M, Yin D, Bartels M, Xu BY, Roller PP, Long YQ, Li P, Kattah M, Cohn ML, Moran K, Tilley E, Richert JR, Wang S.

J Med Chem. 2004 Oct 7;47(21):4989-97.

Efroni S, Harel D, Cohen IR.

Genome Res. 2003 Nov;13(11):2485-97. Erratum in: Genome Res. 2004 Jan;14(1):197.

Sattar R, Ali SA, Abbasi A.

Biochem Biophys Res Commun. 2003 Sep 5;308(4):726-35.

von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.

Mol Cell Proteomics. 2003 Jul;2(7):426-7. Epub 2003 Jun 25.

Krueger GR, Marshall GR, Junker U, Schroeder H, Buja LM.

In Vivo. 2003 Mar-Apr;17(2):105-18. Review.

Cowell LG, Davila M, Kepler TB, Kelsoe G.

Genome Biol. 2002;3(12):RESEARCH0072. Epub 2002 Nov 21.

Krueger GR, Marshall GR, Junker U, Schroeder H, Buja LM, Wang G.

In Vivo. 2002 Sep-Oct;16(5):365-86. Review.

Kumar R, Eastwood AL, Brown ML, Laurie GW.

J Mol Biol. 2002 Jun 7;319(3):593-602.

Zen J, Treutlein HR, Rudy GB.

J Comput Aided Mol Des. 2001 Jun;15(6):573-86.

Mehr R.

Arch Immunol Ther Exp (Warsz). 2001;49(2):111-20. Review.

Kohler B, Puzone R, Seiden PE, Celada F.

Vaccine. 2000 Nov 22;19(7-8):862-76.

Cano P, Fan B, Stass S.

Immunogenetics. 1998 Oct;48(5):324-34.

Bajorath J.

J Biol Chem. 1998 Sep 18;273(38):24603-9.